MRIQC: individual T1w report

Summary

Subject ID: 023_ExercisePre.
Date and time: 2018-05-07, 01:13.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3267451842579852
cnr			3.828012914471337
efc			0.6067886115038116
fber			83.96290588378906
fwhm	avg		4.2032066666666665
fwhm	x		4.14975
fwhm	y		4.2988
fwhm	z		4.16107
icvs	csf		0.20784030519538949
icvs	gm		0.4468774790494629
icvs	wm		0.34528221575514767
inu	med		1.101635217666626
inu	range		0.37921770513057695
qi	1		0.00012816164379565758
qi	2		0.0007718482357756324
rpve	csf		24.440468851547756
rpve	gm		12.196139806706636
rpve	wm		18.0696340654083
size	x		180
size	y		256
size	z		256
snr	csf		3.2557411159259373
snr	gm		11.458982914990353
snr	total		10.408102622640484
snr	wm		16.509583837005163
snrd	csf		13.795992173371515
snrd	gm		25.07849671836493
snrd	total		25.631622194785024
snrd	wm		38.02037769261863
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	16.28125674450957
summary	bg	mad	17.231569290161133
summary	bg	mean	61.76039505004883
summary	bg	median	54.255027770996094
summary	bg	n	2992978.0
summary	bg	p05	32.924631881713864
summary	bg	p95	117.72068443298335
summary	bg	stdv	30.412818908691406
summary	csf	k	-0.11203241448266965
summary	csf	mad	116.22804260253906
summary	csf	mean	358.3309326171875
summary	csf	median	362.8658142089844
summary	csf	n	24222.0
summary	csf	p05	173.96062698364258
summary	csf	p95	531.2387573242188
summary	csf	stdv	111.45183563232422
summary	gm	k	0.36057050722385364
summary	gm	mad	55.19824981689453
summary	gm	mean	660.7202758789062
summary	gm	median	659.6212158203125
summary	gm	n	41206.0
summary	gm	p05	567.5628204345703
summary	gm	p95	756.7674865722656
summary	gm	stdv	57.56298065185547
summary	wm	k	0.5971349815884812
summary	wm	mad	56.026058197021484
summary	wm	mean	1000.342041015625
summary	wm	median	1000.02197265625
summary	wm	n	192168.0
summary	wm	p05	899.5626007080078
summary	wm	p95	1100.0161865234377
summary	wm	stdv	60.572052001953125
tpm	overlap	csf	0.19666606187820435
tpm	overlap	gm	0.5211575627326965
tpm	overlap	wm	0.5409469604492188
wm2max			0.5358867839629546

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	1b459ae40be403897558ae338e04bb3e
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.