MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3267451842579852
cnr3.828012914471337
efc0.6067886115038116
fber83.96290588378906
fwhmavg4.2032066666666665
fwhmx4.14975
fwhmy4.2988
fwhmz4.16107
icvscsf0.20784030519538949
icvsgm0.4468774790494629
icvswm0.34528221575514767
inumed1.101635217666626
inurange0.37921770513057695
qi10.00012816164379565758
qi20.0007718482357756324
rpvecsf24.440468851547756
rpvegm12.196139806706636
rpvewm18.0696340654083
sizex180
sizey256
sizez256
snrcsf3.2557411159259373
snrgm11.458982914990353
snrtotal10.408102622640484
snrwm16.509583837005163
snrdcsf13.795992173371515
snrdgm25.07849671836493
snrdtotal25.631622194785024
snrdwm38.02037769261863
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk16.28125674450957
summarybgmad17.231569290161133
summarybgmean61.76039505004883
summarybgmedian54.255027770996094
summarybgn2992978.0
summarybgp0532.924631881713864
summarybgp95117.72068443298335
summarybgstdv30.412818908691406
summarycsfk-0.11203241448266965
summarycsfmad116.22804260253906
summarycsfmean358.3309326171875
summarycsfmedian362.8658142089844
summarycsfn24222.0
summarycsfp05173.96062698364258
summarycsfp95531.2387573242188
summarycsfstdv111.45183563232422
summarygmk0.36057050722385364
summarygmmad55.19824981689453
summarygmmean660.7202758789062
summarygmmedian659.6212158203125
summarygmn41206.0
summarygmp05567.5628204345703
summarygmp95756.7674865722656
summarygmstdv57.56298065185547
summarywmk0.5971349815884812
summarywmmad56.026058197021484
summarywmmean1000.342041015625
summarywmmedian1000.02197265625
summarywmn192168.0
summarywmp05899.5626007080078
summarywmp951100.0161865234377
summarywmstdv60.572052001953125
tpmoverlapcsf0.19666606187820435
tpmoverlapgm0.5211575627326965
tpmoverlapwm0.5409469604492188
wm2max0.5358867839629546

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum1b459ae40be403897558ae338e04bb3e
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.